T-lex version 1.1 / January 2011

In the presence module, the sequence identity of the contig sequence overlapping the TE sequence is now take into account to define the presence of a TE insertion. By default, the min sequence identity is 70%.
The information if the identity,  number of mismatches and matches are returned in the "Tresult" file.

Minor changes:
The number of strains in which a TE is defined as absent is now reported in the "Tfreq" file.
Fix the combRes option.
Improve the alignment output.

T-lex paper accepted

Fiston-Lavier AS, Carrigan M, Petrov DA and Gonzalez J. T-LEX: A program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nuc. Acids. Res. doi:10.1093/nar/gkq1291.